edu.mit.sketch.chem
Class ChemClassifier

java.lang.Object
  edu.mit.sketch.chem.ChemClassifier

public class ChemClassifier
extends java.lang.Object

Field Summary

int	backtrack
double	bondLength
java.lang.String	chempath
boolean	classifyBonds
java.util.List<StrokeGroup>	combinedGroups
StrokeGroup[]	forcedGroups
java.lang.String[]	interpretations
boolean	learnBonds
java.util.ArrayList<java.lang.Double>	lineerrors
java.util.ArrayList<java.lang.Double>	polyerrors
java.util.ArrayList<Polygon>	polygons
java.util.ArrayList<java.lang.Double>	polymaxerrors
int	recwindow
java.util.List<StrokeGroup>	strokeGroups
java.util.List<StrokeData>	strokes
boolean	template
java.lang.String	trainFile
StrokeGroup	tryGroup
boolean	verbose

Constructor Summary

ChemClassifier()

Method Summary

java.util.List<StrokeGroup>	alternatives(StrokeGroup sg)
double	avgScore()
StrokeGroup	bestCandidate(int index)
double	bestCandidateProb(int index)
double	calculateBondLength() Approximate the average length of bonds in the sketch
void	classify(boolean incremental)
Candidate[][]	combineCandidateMatrices(Candidate[][] c1, Candidate[][] c2)
void	combineGroups()
void	forceInterpretation(StrokeGroup sg)
void	interpretCandidates(int startstroke)
void	interpretLabels(java.lang.String[] labels)
void	interpretStrokes() Initial interpretation of special objects such as wedge and hash bonds
boolean	isHashBond(java.util.List<StrokeData> strokes, int i, int s) Check whether a sequence of strokes seems like a hashed bond
boolean	isWedgeBond(StrokeData sd1) Check whether a sequence of strokes seems like a wedge bond
void	loadTrainFile(java.lang.String drsFile)
double	localScore(StrokeGroup sg)
void	makeHeader()
boolean	overlapGroup(StrokeGroup sg1, StrokeGroup sg2)
void	polyFit(boolean incremental) Generate polygonal approximations for all strokes
void	reInterpret()
void	reset(boolean complete)
void	resetTrainFile()
void	restoreInterpretation(StrokeGroup sg)
void	restoreInterpretations()
void	setStrokes(java.util.ArrayList<StrokeData> newstrokes)
void	setTrainFile(java.lang.String drsFile)
double	standardize(double val, double scale) Standardize based on average bond length
void	train(java.lang.String labelfile, boolean append)
void	tryInterpretation(StrokeGroup sg)
void	unTry()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

polygons

public java.util.ArrayList<Polygon> polygons

polyerrors

public java.util.ArrayList<java.lang.Double> polyerrors

lineerrors

public java.util.ArrayList<java.lang.Double> lineerrors

polymaxerrors

public java.util.ArrayList<java.lang.Double> polymaxerrors

bondLength

public double bondLength

interpretations

public java.lang.String[] interpretations

strokes

public java.util.List<StrokeData> strokes

strokeGroups

public java.util.List<StrokeGroup> strokeGroups

combinedGroups

public java.util.List<StrokeGroup> combinedGroups

forcedGroups

public StrokeGroup[] forcedGroups

tryGroup

public StrokeGroup tryGroup

learnBonds

public boolean learnBonds

classifyBonds

public boolean classifyBonds

verbose

public boolean verbose

backtrack

public int backtrack

recwindow

public int recwindow

chempath

public java.lang.String chempath

trainFile

public java.lang.String trainFile

template

public boolean template

Constructor Detail

ChemClassifier

public ChemClassifier()

Method Detail

setStrokes

public void setStrokes(java.util.ArrayList<StrokeData> newstrokes)

resetTrainFile

public void resetTrainFile()

setTrainFile

public void setTrainFile(java.lang.String drsFile)

loadTrainFile

public void loadTrainFile(java.lang.String drsFile)

makeHeader

public void makeHeader()

train

public void train(java.lang.String labelfile,
                  boolean append)

classify

public void classify(boolean incremental)

combineCandidateMatrices

public Candidate[][] combineCandidateMatrices(Candidate[][] c1,
                                              Candidate[][] c2)

reInterpret

public void reInterpret()

interpretCandidates

public void interpretCandidates(int startstroke)

interpretLabels

public void interpretLabels(java.lang.String[] labels)

combineGroups

public void combineGroups()

bestCandidate

public StrokeGroup bestCandidate(int index)

bestCandidateProb

public double bestCandidateProb(int index)

localScore

public double localScore(StrokeGroup sg)

overlapGroup

public boolean overlapGroup(StrokeGroup sg1,
                            StrokeGroup sg2)

alternatives

public java.util.List<StrokeGroup> alternatives(StrokeGroup sg)

avgScore

public double avgScore()

tryInterpretation

public void tryInterpretation(StrokeGroup sg)

unTry

public void unTry()

forceInterpretation

public void forceInterpretation(StrokeGroup sg)

restoreInterpretation

public void restoreInterpretation(StrokeGroup sg)

restoreInterpretations

public void restoreInterpretations()

interpretStrokes

public void interpretStrokes()

Initial interpretation of special objects such as wedge and hash bonds

isHashBond

public boolean isHashBond(java.util.List<StrokeData> strokes,
                          int i,
                          int s)

Check whether a sequence of strokes seems like a hashed bond

isWedgeBond

public boolean isWedgeBond(StrokeData sd1)

Check whether a sequence of strokes seems like a wedge bond

calculateBondLength

public double calculateBondLength()

Approximate the average length of bonds in the sketch

polyFit

public void polyFit(boolean incremental)

Generate polygonal approximations for all strokes

standardize

public double standardize(double val,
                          double scale)

Standardize based on average bond length

reset

public void reset(boolean complete)